HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. In the cram_decode_slice() function called while reading CRAM records, the value of the mate reference id field was not validated. Later use of this value, for example when converting the data to SAM format, could result in the out of bounds array reads when looking up the corresponding reference name. If the array value obtained also happened to be a valid pointer, it would be interpreted as a string and an attempt would be made to write the data as part of the SAM record. This bug may allow information about program state to be leaked. It may also cause a program crash through an attempt to access invalid memory. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.
This page covers CVE-2026-31967 as tracked by Debian, for the package htslib. No fixed version has been recorded for this distribution yet.
This issue can be reached over the network, attack complexity is low, an attacker needs no privileges on the target. No user interaction is required. The scope is unchanged, so the impact stays within the vulnerable component. Rated impact: confidentiality high, integrity none, availability high.
The score comes from this vector: CVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:H/I:N/A:H
DEBIAN-CVE-2026-31967 is classified as CWE-125: Out-of-bounds Read. The code reads past the limits of a buffer, exposing adjacent memory contents or crashing the process.
DEBIAN-CVE-2026-31967 is recorded against 1 package.
Published on 18 March 2026 and last revised on 4 August 2026. No public exploit is currently recorded for this entry. Record sourced from OSV.
security-tracker.debian.org (Advisory)
htslib has other advisories on record. If you are patching this one, these are worth checking on the same host:
These advisories are the same class of weakness (CWE-125: Out-of-bounds Read) in other software:
Each distribution ships its own build and its own fixed version. Pick the one you run:
Details
CVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:H/I:N/A:H
Affected Packages
| Software | From version | Fixed in |
|---|---|---|
| htslib | — | — |
References
Similar Threats
Exploit Protection
DEBIAN-CVE-2026-31967 carries CVSS 9.1 Critical rating. BotEraser checks your installation against this and other known CVE records, and blocks IPs associated with exploit activity.
Check My Site For DEBIAN-CVE-2026-31967 →No credit card required · Results in minutes
ⓘ Data Notice: The information presented above has been compiled from publicly available internet sources. Boteraser aggregates this data solely for informational purposes and does not independently classify, evaluate, or endorse any findings about the vulnerabilities listed. The accuracy and completeness of this information is the sole responsibility of the original publishers. Boteraser and its operators accept no liability for any decisions made based on this data.
Stay up to date with the latest from Boteraser.
We use cookies to improve your experience on our site. By using our site, you consent to cookies.
Manage your cookie preferences below:
Essential cookies enable basic functions and are necessary for the proper function of the website.
CloudFlare provides web performance and security solutions, enhancing site speed and protecting against threats.
Service URL: developers.cloudflare.com (opens in a new window)
These cookies are needed for adding comments on this website.
These cookies are used for managing login functionality on this website.
Statistics cookies collect information anonymously. This information helps us understand how visitors use our website.
Google Analytics is a powerful tool that tracks and analyzes website traffic for informed marketing decisions.
Service URL: policies.google.com (opens in a new window)
You can find more information in our Cookie Policy and Privacy Policy.